rs49165626 SNP Detail

Summary

• ID
  rs49165626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAAACC AAAGACTCCC
  ATTATTACCT GCACATTTGG TCTGTTTCTT TTAGTTGCCC CTTCAAATGC CAGGTAAGAC
  AAAGACGCTG GCTCACTCCC TCCAACATCA ACTTTGAATA TATCTCCAGA TTTAGCGATC
  ACTATGCCAA TCACGTGGTC CCCTTTCACA GGTACATACT AAAAGCAGAA TGAAAGAACA
  R
  TCATAAATAA TACAAATATC ATTACAAAAT ATCTTCTGAA ACTTTCATCT AGGTTGATCA
  GGGTGGGTCT CAACCTATCC AGCCAACTCA TACTCCCCAT GTAGCTGCAA CTACAAAACC
  GGCCCGCACC AGTCCAACTT TATGAACGTC TAATTCACAC TTGATCAAGT TTCAAGTTTT
  CTCAGCATCC TTTACAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146251742	ENSMUSSNP5597921	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49165626					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	310 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	637 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	651 bp upstream
Tssr37061	transcription start site region 37061	663 bp upstream
Tssr37062	transcription start site region 37062	696 bp upstream
Tssr41531	transcription start site region 41531	548 bp downstream
Tssr41532	transcription start site region 41532	654 bp downstream
Tssr41533	transcription start site region 41533	740 bp downstream
Tssr41534	transcription start site region 41534	858 bp downstream