rs49165762 SNP Detail

Summary

• ID
  rs49165762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATATTGAA AGTATGAAAC ACAGGAGTCA CACCTGTGGT
  TTCAAGCACT GAAGGGAGAA GGTGGGGTGG ATCACCAGCT CCATTGACAG TGGGATACAT
  R
  TCATGTCTGA CACTAAGTTG ATTTATGTCA GAAACCTGTT TTAAATTTAA GTGTATTTGA
  TAAAGAAATG TAAATGCAGT TATTTTGCTT ATTTTTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61014599	NES16116680	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A	G	G	A	G
ss144685506	ENSMUSSNP2083487	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49165762					SNP	A	G	A	A	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014599	NES16116680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1999 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	1355 bp upstream
Rr647544	regulatory region 647544	865 bp proximal
Rr647545	regulatory region 647545	1366 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	1380 bp upstream
Tssr72702	transcription start site region 72702	674 bp downstream
Tssr72703	transcription start site region 72703	752 bp downstream
Tssr72704	transcription start site region 72704	829 bp downstream
Tssr72705	transcription start site region 72705	855 bp downstream
Tssr72706	transcription start site region 72706	1657 bp downstream