rs49166562 SNP Detail

Summary

• ID
  rs49166562
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101438524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GTGACTACCA GGAACAAAAC
  T
  CAAGTTGTGG AGGGAAGGGT TTATT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146736150	ENSMUSSNP4514047	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324798527	CHEV_14_101600305	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49166562					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101438524 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	758 bp upstream
Tssr130025	transcription start site region 130025	765 bp upstream
Tssr130026	transcription start site region 130026	670 bp upstream