rs49167476 SNP Detail

Summary

• ID
  rs49167476
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88202650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGGCTTGCTG TGGACTATGA TGAAGAAATA GCAGACAAGA
  GCCAGGAGGT GGAAGAAACA CTTCTCAGTT TATCTTCACA CAGGAGGGGT AAGGGCAGAG
  G
  AGGAGGTCAT CCCATCACAG AGCACACCGG CCTCCGGGCT CTCTGGCGCT GGGATGCAGT
  CCCACCAACA CACTAGAGTA AAGCAGGAAG GCGGCAAACC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900069	ENSMUSSNP1377383	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49167476					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88202650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1952 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	849 bp distal
Rr29783	regulatory region 29783	550 bp proximal
Tssr12871	transcription start site region 12871	789 bp upstream
Tssr12872	transcription start site region 12872	744 bp upstream