CTTCTTGATG TAATTAAGAA CGAACTGCAA AGACCCTAGA AACTCTCTCT AGTCAACCAA GGAAGTTGCC AAAAAAGAAA CTTTCAGTGT TAACTCGGGC R CTCGAGAGAG AGAGAGAGAA GTAGGAGGAT CAGGTTCAAT GTCAGCCTGG GCTACACGGT CAGTTTCAGG CCAGCCTGGG CTACATGAGA CGGAAACAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
---|---|---|---|---|---|---|---|---|
ss147709706 | ENSMUSSNP2948594 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | A |
SNP Consensus Information | ||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
||||
rs49169561 | SNP | A | G | A |
Location: Chr4:140427667 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi15194 | CpG island 15194 | 377 bp distal | ||||||
Cpgi15195 | CpG island 15195 | 709 bp proximal | ||||||
Gm69527 | predicted gene, 69527 | within coordinates | ||||||
Gm69529 | predicted gene, 69529 | within coordinates | ||||||
Rcc2 | regulator of chromosome condensation 2 | 185 bp upstream | ||||||
Rr377298 | regulatory region 377298 | within coordinates | ||||||
Rr603517 | regulatory region 603517 | 473 bp distal | ||||||
Rr603518 | regulatory region 603518 | within coordinates | ||||||
Rr603519 | regulatory region 603519 | 196 bp proximal | ||||||
Rr603520 | regulatory region 603520 | 904 bp proximal | ||||||
Rr603521 | regulatory region 603521 | 1054 bp proximal | ||||||
Tssr39970 | transcription start site region 39970 | 474 bp downstream | ||||||
Tssr39971 | transcription start site region 39971 | 401 bp downstream | ||||||
Tssr39972 | transcription start site region 39972 | 381 bp downstream | ||||||
Tssr39973 | transcription start site region 39973 | 358 bp downstream | ||||||
Tssr39974 | transcription start site region 39974 | 10 bp downstream | ||||||
Tssr39975 | transcription start site region 39975 | 115 bp upstream | ||||||
Tssr39976 | transcription start site region 39976 | 131 bp upstream | ||||||
Tssr39977 | transcription start site region 39977 | 246 bp upstream | ||||||
Tssr39978 | transcription start site region 39978 | 1070 bp upstream | ||||||
Tssr39979 | transcription start site region 39979 | 1091 bp upstream | ||||||
Tssr39980 | transcription start site region 39980 | 1110 bp upstream | ||||||
Tssr39981 | transcription start site region 39981 | 1154 bp upstream | ||||||
Tssr39982 | transcription start site region 39982 | 1166 bp upstream | ||||||
Tssr39983 | transcription start site region 39983 | 1252 bp upstream | ||||||
Tssr39984 | transcription start site region 39984 | 1477 bp upstream | ||||||
Tssr39985 | transcription start site region 39985 | 1539 bp upstream | ||||||
Tssr39986 | transcription start site region 39986 | 1580 bp upstream | ||||||
Tssr39987 | transcription start site region 39987 | 1725 bp upstream | ||||||
Tssr39988 | transcription start site region 39988 | 1821 bp upstream | ||||||
Tssr39989 | transcription start site region 39989 | 1860 bp upstream | ||||||
Tssr44270 | transcription start site region 44270 | 706 bp upstream | ||||||
Tssr44271 | transcription start site region 44271 | 673 bp upstream | ||||||
Tssr44272 | transcription start site region 44272 | 533 bp upstream | ||||||
Tssr44273 | transcription start site region 44273 | 713 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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