rs49170393 SNP Detail

Summary

• ID
  rs49170393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137446827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT GAAGCCTCCC TGTGTACTGG
  R
  GATCTAGTTC CCCTTCAGCC TTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147617716	ENSMUSSNP5164142	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321366757	CHEV_4_137275431	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49170393					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137446827 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	444 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	within coordinates
Rr100343	regulatory region 100343	within coordinates
Tssr39778	transcription start site region 39778	293 bp downstream
Tssr39779	transcription start site region 39779	263 bp downstream
Tssr39780	transcription start site region 39780	4 bp upstream
Tssr39781	transcription start site region 39781	169 bp upstream