rs49170396 SNP Detail

Summary

• ID
  rs49170396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCTATA TTGTATACCA
  CAGCTTCTCT CTGAATTATG TCTTATTTAA TTTTACATAA ACTCTATAAA CTTAAACTGG
  ATATTTATAA ACACCGAAAG AAAACTGGTC TTATCATCTA TTTCCAGCAA ATTGTGCATA
  ATTCTGATTA AGGAATTTAG CTTAGGCTTT TGCATGTTGT AAGTTTACTT TTGCAATCGT
  R
  GGCAAGGCAG AGTAGGGGCC AACTATTGGC CTGGGAACTA GGAAGTGATA GCAAGAGGGA
  GGAAGAAGCT GGGGTCCCAT CATCCTTTGC AAGGGCACAA GCCCTCCTGC TAGGCACTTC
  TTAAGGTTCC ATCATTTTCC TAAAGCACCA CACGGAGGCC AAGTCTTTAC CAGATGGTCC
  TTTGGGGGCA GGGCACTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864408	ENSMUSSNP2124366	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320954475	CHEV_3_127182096	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49170396					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272827 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	Intron
Gm42525	predicted gene 42525	1001 bp downstream
Gm43355	predicted gene 43355	257 bp downstream
Gm54939	predicted gene, 54939	1942 bp upstream