rs49170513 SNP Detail

Summary

• ID
  rs49170513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78696925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCAAAA ACCCAAAAAA
  AAAAAAAAAA AAAAAAAAAA AGAGTTGCTC CTGGGTCAGG GAGGTAACAT CATGGTACTT
  TGAAGGACAG CTAGAAAAAG CACCTGACCA GCCCCGTTAG TAAACTGAAT GGGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTCTGA GTACTTAGTC TTGTAGTGGC AGAGGCTTCT
  Y
  TCTCTAACCT TACAGATCCT TTCAATGGTC TTCCTAGCTT AACGACATGG AAAGTACTAC
  CTGTTACATG CCTAGTAAGT TCTTTTTCTT GCTTTCCCTT TGCCCTGTGT TAGGGATCAA
  ATCCAGGCCC ATGAGCATGT GGGCAAACAC TTTTTTATTG AGCTATATAT CCCCAAATGG
  TTTTCAGATA TTTTACCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320360049	CHEV_2_78706738	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49170513					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78696925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11839	CpG island 11839	1760 bp proximal
Rr559887	regulatory region 559887	1976 bp proximal
Ube2e3	ubiquitin-conjugating enzyme E2E 3	1543 bp upstream