rs49170733 SNP Detail

Summary

• ID
  rs49170733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61500165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGAAG GTGTCACAGC
  CCAGCACCAT ACAGATGAGT AGCATGTGGT GCTATCATAT TGCACGGAGA AGACAATAAT
  TGAAACTGAA TGAAGTCATG TCAGCTAAAA ATGTCAAATA CAGGAATTTT CATATAATCT
  TTTAGGCTAC AGTTGCTTGT ATAAACAGAC AAAAACAGCT ATGAAATAGC ATCCATCACA
  R
  AGGAGGCACC CATTCTTCCT CCTATAATAT CGGCACCGCA GTAAGGTCTA TCATCAAGAA
  CAATTTTGTG TTTGAACACA AAAATGTTAC TGGACAAAAG TAGAAAAGGT AACTTTGTAG
  TTAACTTTTA TTTTTAAGAA CAGCATTTGG TACAGTGAAA AAAATAAAAT AAAGTCATTA
  CAGGATTCAG TTATATAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61823458	NES17746805	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs49170733					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823458	NES17746805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61500165 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	110 bp downstream