rs49171044 SNP Detail

Summary

• ID
  rs49171044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21284831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGATCTA AACCTGAAAA
  CTATGGCACT AAGACATGCC TAGCCACCTC ACACGTGTCC ATGTTCTCTT AGGCTTCAGT
  CACATGCTCT TTTGGCTGTC TATGTGTTAC GGCCTGGCTC AAGCCCTTCC TGTTGGGTCG
  CCTATTGTAC TGCTCAATCC CCTTCTCACA GTCCTGTGAA AGGGTAGCTA ACAGTTCCTT
  Y
  ACACATTCTT TTATAGAATG TAGATTTACC ATGGAGTGAT TGCACAGACA GGGCCCTAAT
  CCTGGACTCC AATTTGGCCA TTTACAAGGT GACTTCTGTG AGATGCTTGC CATCATTCTT
  TCTTAGTTCC TGCATCTGCA GAATGAATTT AATAATAGGC TTATAGACAT GATAAGGCAA
  TGCATACAGT AATGGACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146346645	ENSMUSSNP7185418	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49171044					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21284831 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	674 bp proximal
Rr552699	regulatory region 552699	962 bp proximal