rs49172072 SNP Detail

Summary

• ID
  rs49172072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29264416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGGCC CTTGTCATAT
  ATGTTGAAAT TAAGGCTCAG GGCCAAACTC CTAGTGGTAT GTGGGGAACC ATTGACTTGC
  ATAACTTGTT TCAGCTACAG AGCCTAAAGC CATGTGCACA GAAACACACA GGCAGAAGTG
  CCCAGTGTGA ACCAATTCCA GCTCTGATTC TTTGCTCAGG GTCTAGTGAG TGAGGAGGAA
  R
  CCATAGGGAT GGCTAGAGCA AGCTAGAATG TGTAGAGAAA GACCTTTAAT CCCAGCACTT
  GGAAGCAGAG GCAGGTGAAT CTAAGGTTCC AGGCTAAGCT AGCCAAGTAA GTTCTAGACA
  GCCAAGGCTA CCCAGAAACC CTGTCCCATA ACATTATACG TCCTGTCTCA AAAGAGTAAG
  TAAAAGTCTT GGGGTTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559306	NES16575696	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49172072					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559306	NES16575696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29264416 () rs orientation: forward

Symbol	Name	Function Class
Tssr143492	transcription start site region 143492	1773 bp upstream