rs49172196 SNP Detail

Summary

• ID
  rs49172196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98155213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGATTCCC CACTGGGCTG GACAGCCTCA GCCATGGCCC
  CGCTTCCCCC CACCGCGGGG CCACCTGCTT TGATCTGGCC TCTGGCCTCA GTGGGTGTGG
  R
  GTTCTGGGGC GCCTATGTCA CAAAGCCCCC CACCCCAGGC CCTGGGCTTG CGTCCTGGTG
  GAAAGGTAGA TGCAGCCCTC TGCTCTCCTT TGACCTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148453796	ENSMUSSNP5893038	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325078973	CHEV_15_98087763	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49172196					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98155213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	149 bp distal
Gm62000	predicted gene, 62000	1936 bp upstream
H1f7	H1.7 linker histone	39 bp upstream
Rr311340	regulatory region 311340	449 bp distal
Rr391174	regulatory region 391174	132 bp upstream
Tssr136230	transcription start site region 136230	20 bp upstream
Tssr136231	transcription start site region 136231	77 bp downstream