rs49173149 SNP Detail

Summary

• ID
  rs49173149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACAAGT GCATCTGACA
  GAGGGGGGCT GGGGAGATCC CCCAGAAGCC CAGCTGCTTC TGCCGAGAGA AAAAGGCACA
  TTTTGAATGC CAGCCACTCC CACCAGTTAT CGTGGACAGA AAGAAAAAAA TTAAACAATC
  CCTGAGAGTT GCTACAATTA TGCTATCCTG GGGACTTTTT AAAAATTGTC CCAGTCCGCC
  Y
  CACTCACGTT CATCTGCCTT TTTACCTATA TATGGTGAAG CAGAGAAATG AGTGCTTGGA
  CCACGGTTTA GATTTCTAAG AAAGTTTTGA CCCATGGTGA ATTTCTCCTT TGTTGCTGAA
  CTTTTGATTT TGACTTCATA TTGACTAAGG GATCCTTTGA GCTGTGTGTG TATGTGTGGT
  TTTGTGTGTA GTGTGGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136408165	ENSMUSSNP6795481	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49173149					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173915 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1327 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	818 bp distal
Tssr89253	transcription start site region 89253	272 bp downstream
Tssr89254	transcription start site region 89254	339 bp downstream
Tssr89255	transcription start site region 89255	429 bp downstream
Tssr89256	transcription start site region 89256	453 bp downstream
Tssr89257	transcription start site region 89257	1559 bp downstream
Tssr89258	transcription start site region 89258	1600 bp downstream
Tssr89259	transcription start site region 89259	1623 bp downstream