rs49173230 SNP Detail

Summary

• ID
  rs49173230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89735296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC CCCTATGTGG AGCTGTGGCC
  Y
  CAGCCCTGGG CCCTTGAGCC GGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145495020	ENSMUSSNP2741901	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49173230					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89735296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1851 bp distal
Gm56831	predicted gene, 56831	992 bp upstream
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	1244 bp distal
Tssr82370	transcription start site region 82370	1998 bp upstream
Tssr82371	transcription start site region 82371	1988 bp upstream
Tssr82372	transcription start site region 82372	1957 bp upstream
Tssr82373	transcription start site region 82373	1347 bp upstream