rs49173578 SNP Detail

Summary

• ID
  rs49173578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116410119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCAGAC TTCCCCATCC
  ACAGCTTCGA GACAAGGTTA TGGTCCTCCC TAGTGCCTGT TTTCTTACCC TATGCCACCT
  AGGCCAGGCC AGACTGTAGC ACATGCTATG AAGGTTGCTC ACCCTTTGAA AACCATCAAG
  TGACAGAACC TGCTTTGTTC TTGAGAACTA CAAGGTCTGT GTCTTCTGTC CAGGTCCCTA
  Y
  GATGCTATAG CTGGCAGCTG TCTCTTCCCA GTCTAGCGCC CTGAGGACTT CTATGCCACT
  CTTCTCTCTC TTCAAGACCT GTCTCCCAGT AAAGCAAGGG TGATCGCATG TCCGTTCCTT
  CCCAGGAACC GGCATTAAAG ATTATTTAAA ATTTATTTAT GTGCATGTGT GCTTAAAATG
  AGTACACACT TGTCAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436663	NES15940232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49173578					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436663	NES15940232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116410119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375622	regulatory region 375622			within coordinates
Rr583752	regulatory region 583752			1894 bp distal
Rr583753	regulatory region 583753			1489 bp distal
Sass6	SAS-6 centriolar assembly protein			Intron
				Noncoding-Transcript-Variant
Trmt13	tRNA methyltransferase 13			1883 bp upstream