rs49173875 SNP Detail

Summary

• ID
  rs49173875
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78431232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAACCCA AGCTCATCAG
  CAGTTCCTCT GCTCCTCCTA GCCAGTCAGC CTACTAACAC TAACATGTAG TTTCCTTTAC
  CAGCTTCTCA GGTGGACCCC CAAGTCTGGG ACGTCCAGAA CCCTCTGTTG CTAAACACCA
  TTCTCCTGTT GTCATCCAGT TCCTGGACTC TACCAGGTAC ATCACCCAAG CTCAATGCCC
  W
  CTCTCTCTCC AGAGCCTCAG GGGACTTAAG CCCATCATTT CTGACTTCTT AAGGAAAAAA
  CTCCTTCACC CCACCTCTTC CCCCTTTAAC ACCCCTATTC TAGGGTGTGG TGTTGCACAC
  CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGCAGATTT CTGAGTTAGA GGCCAGCCTG
  GTCTACAGAG TGAGTTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427118	NES16810460	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T	T		T	T	T	T	T	T	T
ss136668134	ENSMUSSNP575934	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49173875					SNP	A	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427118	NES16810460	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78431232 () rs orientation: forward

Symbol	Name	Function Class
Gm47430	predicted gene, 47430	1793 bp downstream
Gm69163	predicted gene, 69163	1069 bp upstream
Rr383643	regulatory region 383643	493 bp upstream