rs49174011 SNP Detail

Summary

• ID
  rs49174011
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117234951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GGGGCTGCCA CCTAGTGGTG
  S
  CAGTAACAAA CAACAAGCAA GGCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149148158	ENSMUSSNP2605310	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321658434	CHEV_5_117546895	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49174011					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117234951 () rs orientation: forward

Symbol	Name	Function Class
Rr618556	regulatory region 618556	468 bp distal
Rr618557	regulatory region 618557	within coordinates
Rr618558	regulatory region 618558	within coordinates
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron