rs49175395 SNP Detail

Summary

• ID
  rs49175395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81334301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCGGGG GGGAGGGGCC
  CTTCAAGGCC CAGACTCACT GGCTCTGGCT CCAGCCACTC TCTGCCAAAC ATTCATCACG
  GGGAATTTTG TGGAAGGAAC CCGGGGCTTG CTGTCATGTT CTCAGTCACC ATCAGGCAAG
  GTTCTTGTGT CCTGTCCCTT CTCACCTCGT CTGGGAGGGC CTGCTCAGTG GGCAACTGGC
  Y
  GGTCCAAGCT CTAGGTGCTG CGGACGCTGG AAATGCTGGA CAGCGGCTCT CTCATCCTGA
  AGCTGAGTGA CCGAGAAGTC CGAAAACTGT CCCTGGGCCT CAGGGAGCTG TCAGTGGTGG
  ATGCACCGGA GTGGGCCTCG GTGATCCGGG TCAGGCAGTC TCCTGGACCT CGCAGACCTA
  GCCAGAGACA GCCGCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61292399	NES16908900	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49175395					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292399	NES16908900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81334301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1810 bp distal
Cpgi1994	CpG island 1994	53 bp proximal
Rr402085	regulatory region 402085	1882 bp downstream
Rr435686	regulatory region 435686	1585 bp distal
Rr435688	regulatory region 435688	934 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	within coordinates
Tssr98631	transcription start site region 98631	1129 bp downstream
Tssr98632	transcription start site region 98632	1155 bp downstream
Tssr98633	transcription start site region 98633	1183 bp downstream
Tssr98634	transcription start site region 98634	1219 bp downstream