rs49175464 SNP Detail

Summary

• ID
  rs49175464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124785166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGATTT TTTTGGGATA
  AGGTTTCTCT GTCTAGCCCT GGCATAGATT CACTCTGTAG ACTAGGCTAG CCTTGAACTC
  AGAGATCCGC CTGCCTCTGC CTCCCAAGTG CTGGGATTAT AGGTGTTGCA CCACCACTGC
  CCAGCCACTT TGGGATTTTT GAACTGTTAT CAAGAGGCTT TCGAGGAGGT CAAACTTCAA
  Y
  AGCAACCTCT CCATGATAAT GTAGCTAATG ATCAAACGAC ACTCAAAACT AACCCTTAAA
  GCACACATCC ACCAGACAGC GTGCCCACTC GTAGTTCCAT TACTCAGGAG GCTGAAGCAG
  GAGGATGAAG GACTAAGGCT TCAGCAACCT AGGGAGCCGC AGGGGACAGT AGTCTCAATC
  CCTACATTCT CCTGAACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60941245	NES16184859	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49175464					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60941245	NES16184859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124785166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17971	CpG island 17971	472 bp proximal
Gm67886	predicted gene, 67886	1325 bp downstream
Rr145728	regulatory region 145728	within coordinates
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	474 bp upstream
Tssr58846	transcription start site region 58846	455 bp upstream
Tssr58847	transcription start site region 58847	695 bp upstream
Tssr58848	transcription start site region 58848	733 bp upstream
Tssr58849	transcription start site region 58849	1521 bp upstream