rs49176060 SNP Detail

Summary

• ID
  rs49176060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48193343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGACAA AGAGGAAGGC
  AGAATACAGA CATAGAAGTG GGGAGAGGCA CCTCTTTTCC TTGCTTTGGT AAACAAGATT
  TATACTTGCT GAACAGAAAG TGTGTCTAAA ATATTTGCCC ACACAGCGTA TCTTTAAAAC
  TAATGGGAGG TAGATGAAGG GTCCACATGG AGACCCTTCC TACCACTGTT CTTCACTGAT
  W
  TCCTCTGCCT CAATCAAGAC ATGTATTCCA CCTGTCCCTC TGCCATGAAA TTGGCAACAC
  TGTCTACACA AATAAATGTA TGAAAGCACA TGGACATTTT GGAGAGTCTT CTTGGCCAAC
  CTCTTCATTA CCAGACCTCA GGCTACTCTG ATCATTTCCC TTTTCCCTAC CATTTGTTTG
  ATGCTCTCTT GACTATGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394841	NES16768701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49176060					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394841	NES16768701	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48193343 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	within coordinates
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	307 bp proximal