rs49176123 SNP Detail

Summary

• ID
  rs49176123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121302832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTAGTTC AGGTCCCCTG GAATTAGAGT CATGGATGAC
  TGGGCCACAT AGTCCTCTAT AAGAGCAACA ATTGCCCTTA ACCACAGACC CATCTGCCAG
  Y
  CCAAATACCT TTCTTTCTTT CTTCTTCTTT TTTTTTTTTT TTTTTTTTTT TTTTAGTTTT
  TTATGTTCAT TTTTCAGAGG CAGGGTCTCT TTATGCAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147387167	ENSMUSSNP6741061	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320483274	CHEV_2_121298087	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49176123					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121302832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	1602 bp proximal
Gm75774	predicted gene, 75774	1738 bp upstream
Mfap1b	microfibrillar-associated protein 1B	within coordinates
Rr563831	regulatory region 563831	557 bp proximal
Rr563832	regulatory region 563832	841 bp proximal
Rr563833	regulatory region 563833	1706 bp proximal
Rr563834	regulatory region 563834	1749 bp proximal
Tssr25938	transcription start site region 25938	1642 bp downstream
Tssr25939	transcription start site region 25939	1690 bp downstream