rs49177515 SNP Detail

Summary

• ID
  rs49177515
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88865478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGTAATG TATGGAATGG CCCACCTTAG CGCCTTGGCA
  GTGTCCACTT CTGGTGGATT TCTGTGTCTC ATTCAGGTGT CATTGGGTCC CATCCAATTG
  A
  TATCGGAATG CGTTTCACGT GTCACACAGA AGGCTGTGTG TTTCAGTAGC TTGACTGCTT
  GCATCTCAAA GCCCTAGATT TGATTCCCAG CTGGCTAAC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132548932	ENSMUSSNP1621069	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49177515					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88865478 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	1650 bp downstream
Coil	coilin	within coordinates
Cpgi3523	CpG island 3523	within coordinates
Gm10367	predicted gene 10367	491 bp upstream
Rr237597	regulatory region 237597	1523 bp proximal
Rr247482	regulatory region 247482	within coordinates
Rr253858	regulatory region 253858	1726 bp proximal
Tssr104059	transcription start site region 104059	728 bp downstream
Tssr104060	transcription start site region 104060	691 bp downstream