rs49177790 SNP Detail

Summary

• ID
  rs49177790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164381317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGCACT AACTGATAGG GGTGCTTTAC ACATGGCCAG
  ATACGAGACT AGACATAGAG TGTGATATTT ACCAGCATCT TATCAGTGAG AGCACAAAGT
  R
  TGACCTGGCA GGAGGGAGCT TCTCTGCTGT GTGATTTGAG CAGAAGGTTG GTGACTCTTC
  TAAGAGCCTT ACAAGGGAGT GAGATCTTTG GGTGGGATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60336981	NES15838291	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G	A	G	G	A	G
ss145981139	ENSMUSSNP98427	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49177790					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336981	NES15838291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164381317 () rs orientation: forward

Symbol	Name	Function Class
Gm70527	predicted gene, 70527	318 bp downstream
Rr372378	regulatory region 372378	131 bp downstream
Rr422241	regulatory region 422241	631 bp distal