rs49178159 SNP Detail

Summary

• ID
  rs49178159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164146995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGAGTGG AACGGAGTTC AGAGCCCAGA GGTAAACTCT
  TGGCAATAAA TTAGTTTTTA ACAAAAATGT CAGCACCATT CAGTGAGAAA AAAAGGAGTA
  Y
  TTGCAAGTTA TTGCTGGGAT AACTGAATAT TTGCATTACA AGGATCAATT TAGAGTCTTG
  CCTTGAGTAG CTCAAAAAAA AAAAAGATCA TAGTAAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145976338	ENSMUSSNP6060107	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49178159					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164146995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422184	regulatory region 422184			1887 bp distal
Rr422185	regulatory region 422185			249 bp proximal
Rr422186	regulatory region 422186			1316 bp proximal
Rr422187	regulatory region 422187			1868 bp proximal