rs49178748 SNP Detail

Summary

• ID
  rs49178748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121427556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGGAA ATGAGTAAGA
  ACTCATGACC AGGGCCTGGG CTCAGTGATG TGGACGGAGT CCTCCACTTA TTGCAGACAC
  TAACTGCAGC CAACAGATTA TTAGCAAAAA ATGAAGGATC TCAAGTGCCA GGGTTATTTA
  TAAAGAAACA GCTTCTGTGG CTTTGATAAA TTTATCATGA AATGTCGTGC TGAAACCCAG
  Y
  CCAGCCAGAG CTCAGTACAG CTGTGATCAC AACTGGAGAC ATGCTGAAGG TTCTGGATGT
  AGGAACATCA AACACCTGAG TATGTGCATG TATGTATGAG TGCACATGTG AATGCATGCA
  TGTTCTTACA TGTGTTTGTA TGTCTGTGTG TTCCAGCATA TGTTTGTGTG CACATGTATG
  TGCATGTGTG TGCAAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61239935	NES16854046	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49178748					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239935	NES16854046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121427556 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	786 bp upstream
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr207963	regulatory region 207963	1046 bp proximal
Tssr87791	transcription start site region 87791	1309 bp upstream
Tssr92055	transcription start site region 92055	1275 bp upstream