rs49178773 SNP Detail

Summary

• ID
  rs49178773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34924128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGTTTG CTCAACAAAT
  GGCTCAATGC CCTGGGCTCT GTTCTGATGC TGGAGGCGCT GCCACAAAGC AGGAATCTGC
  TGTGTGCTGT AGGTTGTTTG AAGAGGCAAA AGCTAAATAA GCTGTGCTTT GTCGAATAGG
  AACAGTGTGA GAAGAAAGAA GGAAACTGGG ATGTGAGGCC GGGAGTCAGG GCTCCAGCCT
  K
  CCGTGGCTGG TAAGTGGCTG AGCTCTTTGG GATCCCTGCG GCAGGTTTGG ACAGGAGAGA
  TCTCTGAGCT CAGCTCAGAT CACCCGAATA GAATCCCCAG GGACTGGACT GGATTAAGAT
  CATCAATTCA ATTCTGATCC CAGTAGGAGT GGAGGCCCCA GGATAGTGCA GAGAGCACAG
  CTCTGTCAGT GGGCATCGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149109362	ENSMUSSNP5017735	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322578205	CHEV_8_35520028	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49178773					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34924128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	1272 bp distal
Gm39159	predicted gene, 39159	1138 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	within coordinates
Rr400818	regulatory region 400818	1345 bp downstream
Rr662016	regulatory region 662016	1189 bp distal