rs49179354 SNP Detail

Summary

• ID
  rs49179354
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCAAATG AATCCCTATG
  CTTTTCTGTT ATCCATGCGG TCTCTTTCCA CCAACGGCTC TCACTGGTGA AGACTGTGAC
  AGGAAAAGCC ATAGTTGCCG GCCCTGGGCT CTCAGGCACT GACATAAGGA TGACAGCATC
  AGTGTCTTCT TCCAGGCCTC CCTCTTCCTG ATCAGAGGCA GGGCCGACGG TGCAGCCACC
  K
  CTGAGCAGCC TTCTCGCCCG CACAACCTCC CTCAGCCTCC CTGAGTCCCC CACGCAGCCC
  CAATGGAGTC TGCGCAGGCG TGCTGGGATG GGTGGGGGTC ACGGAACAAA CCCTCTCCGC
  CCCCACACCC CACGGACGCC AGGTATGGGA TTATGGAGCC ATCCACCTAT ACACCGTCTC
  AGTGCCCCCA CGCCGCGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592238	NES16320143	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49179354					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592238	NES16320143	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	within coordinates
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	167 bp upstream
Tssr80889	transcription start site region 80889	390 bp upstream
Tssr80890	transcription start site region 80890	337 bp upstream
Tssr80891	transcription start site region 80891	264 bp downstream
Tssr80892	transcription start site region 80892	332 bp downstream
Tssr80893	transcription start site region 80893	613 bp downstream