rs49180157 SNP Detail

Summary

• ID
  rs49180157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106094411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTAGTCAT AACTAATGGA
  CTCTTGTCAT GTTTCCCTCT GTTCCTTCTA TAGCACACAT TGGAGTATAG ATAAGAGCAT
  GCAAGGGAAG AAAACATACA TACATACATA CATACATACA TACACATACA CACACAAAAT
  ATTTTGTTAA TATATGAGAT CTTGTGATTT TTACATATGT TTGAAATATA AGTCTTTCTC
  R
  ACAAAGTGAA TAAGCCTATA TCAAATTGAA TAATTTTAAC ACTTTAACCC AAATTTCACT
  GATTGGTCAT AATTTATACA GATATACAGT AAACAGATAT TGAACAGAAC ATCTTATAAA
  GACTACTACC ATGCAGACAC AAATATATTT TTACTATTCC CTAATTAATG GTTTGACTGG
  TTTCTGAAAA GGAAACAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146767812	ENSMUSSNP2137497	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49180157					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106094411 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	660 bp downstream
Rr294089	regulatory region 294089	1898 bp proximal
Rr390111	regulatory region 390111	1239 bp upstream