rs49182206 SNP Detail

Summary

• ID
  rs49182206
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42351730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTGACC TAAAATTTTA
  GAAATTTACA TGAGAGATGA CTATTCAAAT ACATGAACAT ATCTTCACTT CCACACGCTT
  CAGAGTCTCC TATTGTGAAT AATATTCAGT GCTGAGTAAG CTGGGAAGCT GTCCATGTGA
  TTTGCAGATG AGTGAACAGC ATGTGTTTTC ACTGCGGCAG GCAGAACTAT AGCACAAAGA
  K
  GCAGGTTCCT GAGCCAACAA AGGTAACCCA AGGCAGCAGC TGCTGCTTTA AGTACACAGA
  TAGCCTTATC GTTCTGATGA TAAGGATGCT TAGCTTGGCT CAGGAACTTT ATCCAATCTG
  ATACAGTAGA GAAGAGCTAG GGCAATACAA AAGCCCAACC CCTGGGGACT TCTAATGGAT
  TCTCAAGCCA GCAAAAATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52630411	NES15520200	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49182206					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52630411	NES15520200	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42351730 () rs orientation: forward

Symbol	Name	Function Class
4732499D12Rik	RIKEN cDNA 4732499D12 gene	1479 bp upstream
Gm32778	predicted gene, 32778	within coordinates
Rr478128	regulatory region 478128	390 bp distal