rs49183711 SNP Detail

Summary

• ID
  rs49183711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110343412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCCTGGG TAGAAGGACA GGGGACAGCT GGAACCATGT
  GCCAGGCCCC TTTTATCCCA CTACTTCCCA CCTCTACACA TTTCTCCATT GCCAACTCTC
  R
  TCATAGGAAC CCCAGATGGA GAAGCACTGG GGGGGGGGGG GTGTCTTGAG TGACTGTTAC
  AACACAGGGT GGGTTGACCT TAGCAGGACC TGGCTGCCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138689933	ENSMUSSNP5325958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49183711					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110343412 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	1456 bp distal
Rr472875	regulatory region 472875	87 bp distal
Rr472876	regulatory region 472876	210 bp distal
Rr472877	regulatory region 472877	816 bp proximal
Rr472878	regulatory region 472878	880 bp proximal
Rr472879	regulatory region 472879	960 bp proximal
Tssr115196	transcription start site region 115196	1461 bp downstream