rs49184877 SNP Detail

Summary

• ID
  rs49184877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTAGAAA CCAAATCGCT
  GTAGTCCTAG GCGAAGGAGC AGGAGAAACC CCGCCTTCCC TCGCTCCCCT ATCCCGGGTG
  CTACCCCTGC TAGCCGCCTG CCTCTGGCCC CGCCTACCAT AGCCTCGCCC CTCCCACCTA
  CTCTCGCCAA CCAGTTGCCG CTTCGGCCAC GTGGAGAGTA GTTTTCCTCC AGCCGCAATT
  Y
  CAGCGCCTGT CCTACCCACG CGCACATTTG TCTTTCCCAG ACGAGGTTAA CGTCTCATCT
  CGCACAGCTG TGCCTTCTGA GCCCTTCCCC TGGAGACATT GTTCTCTGTG CCCCCCTTTG
  CTTCTGCTCT GTTATCCTTC CTTGATTCTC GTAGAGGAGC TTGGGAGTGC GCTCCCTGTT
  CCTAAAAGGA CTCCAAACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148003938	ENSMUSSNP6776077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320565064	CHEV_2_153604943	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49184877					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	within coordinates
Efcab8	EF-hand calcium binding domain 8	724 bp upstream
Gm75501	predicted gene, 75501	within coordinates
Rr567738	regulatory region 567738	within coordinates
Rr567739	regulatory region 567739	516 bp proximal
Tssr20916	transcription start site region 20916	20 bp upstream
Tssr20917	transcription start site region 20917	33 bp upstream
Tssr20918	transcription start site region 20918	61 bp upstream