rs49185341 SNP Detail

Summary

• ID
  rs49185341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACCCACT TTATTGTGTG ATCAAAATTT TTTCTTAGAG
  ATTAAAAAAA AACAAACCTG AAATGGAGTC TACAAAGAAA AGGATGTTTT ACAGAGAGAA
  W
  ACTTTCCAGA TTATCTGACT CTAGTCTGTC ATTTATCCTG ATTTTAGTTT TTCTTGACAT
  TGAGCAATTT TAGTCTCTGA AGTTGCAGCT AATTGATAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136309772	ENSMUSSNP961127	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49185341					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1286 bp proximal
Gm10177	predicted gene 10177	705 bp downstream
Gm48081	predicted gene, 48081	1612 bp upstream
Gm65989	predicted gene, 65989	521 bp downstream
Rr676656	regulatory region 676656	788 bp proximal
Rr676657	regulatory region 676657	1518 bp proximal
Rr676658	regulatory region 676658	1623 bp proximal
Rr676659	regulatory region 676659	1842 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1471 bp downstream
Tssr88822	transcription start site region 88822	1495 bp downstream
Tssr88823	transcription start site region 88823	1517 bp downstream
Tssr88824	transcription start site region 88824	1543 bp downstream
Tssr88825	transcription start site region 88825	1558 bp downstream
Tssr88826	transcription start site region 88826	1644 bp downstream
Tssr88827	transcription start site region 88827	1737 bp downstream
Tssr88828	transcription start site region 88828	1760 bp downstream
Tssr88829	transcription start site region 88829	1783 bp downstream
Tssr88830	transcription start site region 88830	1799 bp downstream
Tssr88831	transcription start site region 88831	1844 bp downstream