rs49186106 SNP Detail

Summary

• ID
  rs49186106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104696565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCCGC GCAGCTGGAG
  GCGGTGGAGC CCAAGGTACC GGGGCCCCAG CTGGTGGGTG GCGAGGCGTC GTGGGAACTG
  ACCTCGGAGG AGAGCACTTT CCCGATTCCC GGATCGCTCC GGGAGCGGCT TGGGGGGCGG
  GGGGTGTTCC GGGCCAGGCA AGAGAGAGCG CCCCAAGCTG TGGGCCAGGC GCTCTAGCCT
  Y
  CCAAGCTCTC GAACCAGAGC CCAGAGTCCT TCCCTTTCTG AGTCTTTCCT TTCTGGACCT
  CCCTAGCTGG GCCAGGGACA CACTTAGATC TCCGTGAGCG ACTCAACCCA GACGCTCCAG
  TTCCGGGCAG GGAGTAAGAA ACAGGGCCTC AGGCTGGCTA GGGGTGGGAG TTCTGGCCTG
  GGATGGGGAA TGGCGGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431848	NES15936374	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49186106					SNP	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431848	NES15936374	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104696565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	within coordinates
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31056	transcription start site region 31056	654 bp downstream
Tssr31057	transcription start site region 31057	408 bp downstream
Tssr31058	transcription start site region 31058	394 bp downstream
Tssr31059	transcription start site region 31059	203 bp downstream