rs49186171 SNP Detail

Summary

• ID
  rs49186171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16193717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGGAG AGGAGACAGC
  TGGCTTGGTG GCTTCACCCA CAGGAAGCCT TGGTACCCCA CCAGCTCCTT AGACAGGTTA
  GTTCTGTCCA TGTCCTACTT CCTTAACTAG TTCCTTTTTT GACCCAGTTC CCCAAACCTT
  GGTCATTGAG ACTTTATTTC CTGAGCCATA TTGAGGAAAG ACAGGTGAGA AAGAAAACCT
  Y
  TCCAGCGTTG GTTGGTGTGT GAGGGGTGGG TTCCCTGCTT TAGGAGATTG GCCCTGGTCC
  TGACACAATG TGACTCATAT AAGACTCTAT GTACAAGCTT CCCCTGTGTT GGCCACAACT
  GCAGTTTCTA CTAACTTGGA ATCAATTGTA TCATGTGACT AGGTATATGT GTGACTTCCA
  CCATGTTTAA TGGCACAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620140	NES15517403	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49186171					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620140	NES15517403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16193717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	1335 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118440	transcription start site region 118440	1834 bp downstream
Tssr118441	transcription start site region 118441	1719 bp downstream
Tssr118442	transcription start site region 118442	1499 bp downstream
Tssr118443	transcription start site region 118443	1015 bp downstream
Tssr118444	transcription start site region 118444	954 bp downstream
Tssr118445	transcription start site region 118445	787 bp upstream