rs49186572 SNP Detail

Summary

• ID
  rs49186572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52141345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CATCCCTCCA GCGCAGAGCT GTTTGCAGGC AAGTTCCTGG
  AAAGTGACTG TGGGCTGAGA ATTCAGTTTT TCCTAAAAGC TCTGTCAGGT CCTCTTCTGT
  Y
  GGTTGCCTAT GAATCAAGCC TGACACGGTG GGTGACTAGC GATTTGAGCC TTGGTAGCAA
  ACACGTCGAC GGTGCAGTGG GAGTTTTTGT TTGTGTTTTG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145757475	ENSMUSSNP17700	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49186572					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52141345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	686 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	925 bp downstream
Rr528751	regulatory region 528751	1656 bp distal
Rr528752	regulatory region 528752	1155 bp distal
Rr528753	regulatory region 528753	1335 bp distal
Rr528754	regulatory region 528754	537 bp distal
Satb1	special AT-rich sequence binding protein 1	1027 bp upstream
Tssr145166	transcription start site region 145166	1540 bp downstream
Tssr145167	transcription start site region 145167	1517 bp downstream
Tssr145168	transcription start site region 145168	1492 bp downstream
Tssr145169	transcription start site region 145169	1300 bp downstream
Tssr145170	transcription start site region 145170	1280 bp downstream
Tssr145171	transcription start site region 145171	1056 bp downstream
Tssr145172	transcription start site region 145172	145 bp upstream
Tssr148680	transcription start site region 148680	1684 bp upstream
Tssr148681	transcription start site region 148681	1663 bp upstream
Tssr148682	transcription start site region 148682	1639 bp upstream
Tssr148683	transcription start site region 148683	1620 bp upstream
Tssr148684	transcription start site region 148684	1214 bp upstream
Tssr148685	transcription start site region 148685	1179 bp upstream
Tssr148686	transcription start site region 148686	1071 bp upstream
Tssr148687	transcription start site region 148687	1047 bp upstream
Tssr148688	transcription start site region 148688	1018 bp upstream