rs49187902 SNP Detail

Summary

• ID
  rs49187902
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30906061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA GTGCTAGGAC CCCTCCCCAC
  M
  CCCCAGTGAA CAGTCCGTTC TTCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148703244	ENSMUSSNP3753409	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss322140287	CHEV_7_31991655	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49187902					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30906061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1559 bp proximal
Gm37292	predicted gene, 37292	1721 bp upstream
Gm73020	predicted gene, 73020	1678 bp upstream
Rr645057	regulatory region 645057	1337 bp proximal
Rr645058	regulatory region 645058	1717 bp proximal
Rr645059	regulatory region 645059	1871 bp proximal
Tssr65855	transcription start site region 65855	1196 bp upstream
Tssr65856	transcription start site region 65856	1690 bp upstream
Tssr65857	transcription start site region 65857	1734 bp upstream