rs49188145 SNP Detail

Summary

• ID
  rs49188145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55659742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGCTTG GGGTCAAAGG
  CCACACAGCC TGACTAGAGC CAGCTGACTG GGACTCAGTC CTCACACAGG GCGGGAAGAG
  TTCCCCGTTG GCCTTGACCG TACAGAGAGT ACAAGCCGTT TTTGTGCCTC AGTTCAAACC
  CTTGCTCTGC AGTGGACTTA CTGAATGGGC TCCTCCAGCC CACCAAGCTC TGTCACTTGG
  R
  GAAACAGGAT GACAACTGCT ATTCCTTGAA TAACTGGAAT TAAAGTTACA TCCTGCTGGG
  GACCTGGCTC CACAGGCTGC TCTCCTAGCT AAGTAAGATA CTTCTTGGAG ACATCAGCCT
  CCAATACCGA AGGAACAGGC TCCCCCTTGT CACTCACAGA TGGCTTGGTG GGAGAGCATC
  AAATACCATG TCAAAGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149037261	ENSMUSSNP1206744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49188145					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55659742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5676	CpG island 5676	555 bp proximal
Pdlim7	PDZ and LIM domain 7	within coordinates
Rr281453	regulatory region 281453	within coordinates
Tssr122709	transcription start site region 122709	410 bp downstream
Tssr122710	transcription start site region 122710	428 bp downstream
Tssr122711	transcription start site region 122711	1498 bp downstream