rs49188276 SNP Detail

Summary

• ID
  rs49188276
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35017584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT AGTCATTCCT GCATCTCCCA
  C
  CCCTCCGCGT CCTTCTCTGC CCCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148806725	ENSMUSSNP3810676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322156917	CHEV_7_36103178	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49188276					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35017584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	within coordinates
Gpatch1	G patch domain containing 1	within coordinates
Tssr72030	transcription start site region 72030	249 bp downstream