rs49188835 SNP Detail

Summary

• ID
  rs49188835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGCGCTG CCTTTGTTCT
  TCCCGGTCTG GGCGTTTCCG TGTCCCGCAC TGCGGCGGCG GGACTCAAAG ACTAAGATAA
  ACTTAAAGCA TGGAGACCAC CCTTTCCCCG CAGAGGTGAC CAAAGCCTTA GACGTTTCCT
  TGCAGATCTG GGGCGACTGA CACCCACCCT CTATCTACCG AGAGCCGGGG AAGGCTTGCT
  Y
  ACCATGGTTG CTGCTTCGCG GCTGCCGGGT GGATGGCGGA GGCGAGGAGG AGGTGTTGCT
  TCTTACAGCG CGACTCTTAG GCGGTCGATG TAAGAGAACC TGCGGCACTT GGGCGGATGC
  GGCTCCTTAT ATACAGCTCT GTCACCATGG GGATGGGCCA GGGCCTTTTC CTGTTGGTCC
  AGACCCCTCT GTCTGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622733	NES17045896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49188835					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622733	NES17045896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851329 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	1933 bp upstream
Cpgi7685	CpG island 7685	within coordinates
Gm49450	predicted gene, 49450	within coordinates
Gm56698	predicted gene, 56698	1117 bp downstream
Rr370012	regulatory region 370012	121 bp downstream
Rr404613	regulatory region 404613	22 bp upstream
Rr509236	regulatory region 509236	181 bp distal
Rr509237	regulatory region 509237	within coordinates
Rr509238	regulatory region 509238	93 bp proximal
Rr509239	regulatory region 509239	245 bp proximal
Rr509240	regulatory region 509240	1746 bp proximal
Tssr132970	transcription start site region 132970	374 bp downstream
Tssr132971	transcription start site region 132971	296 bp upstream
Tssr136334	transcription start site region 136334	27 bp downstream
Tssr136335	transcription start site region 136335	80 bp downstream
Tssr136336	transcription start site region 136336	93 bp downstream
Tssr136337	transcription start site region 136337	139 bp downstream
Tssr136338	transcription start site region 136338	149 bp downstream
Tssr136339	transcription start site region 136339	189 bp downstream
Tssr136340	transcription start site region 136340	214 bp downstream
Tssr136341	transcription start site region 136341	240 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates