rs49189444 SNP Detail

Summary

• ID
  rs49189444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44436909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCTAAA GCCTTCCAGC
  CAGGGATTAG CTCCACCTTG TCTGGACCAT CAGTGACTTG AGGGCAAAGA TTATGTTCTC
  AGTCTCTCCA CCCAACACAG ATGGATGTTG TATTGTGCCT TAATGATCAA GTCATTCAGC
  AAGATGAACA ATTATATATA CCTTCTTTTG GAGACAAGGT CTCAATGTGT TCTAGGCTCC
  Y
  GCCCCTGAGT CTTTTGCTTC CACCTTTCTC ATGCCGGGAT TATAGGTGTG TACCACCACA
  CTCTGTGCAA GCTGAGGATG AGCCTAGCAG CATGCACACT CGGCAAGCAC TCTACCAACT
  GAGTACTCTG CCCACCCCTC CTCTCCCAGC CAACAACTCC ACACTGCCTG ATTGACTAGC
  ACTGCCAGCA AACTGACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396621	ENSMUSSNP4507301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49189444					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44436909 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr203858	regulatory region 203858	694 bp distal
Rr206318	regulatory region 206318	91 bp proximal
Rr401337	regulatory region 401337	878 bp upstream
Tssr89167	transcription start site region 89167	356 bp downstream
Tssr89168	transcription start site region 89168	785 bp downstream
Tssr89169	transcription start site region 89169	812 bp downstream
Tssr89170	transcription start site region 89170	857 bp downstream
Tssr89171	transcription start site region 89171	892 bp downstream