rs49189745 SNP Detail

Summary

• ID
  rs49189745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79392488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCGTG AGTTACGACT
  TCACGAGCGC TCCAAACTAC AGGTGTTCTG TTTCCTTAGC TACAAAAGAA GCTCCAAGTT
  TCTCTGGAAA AGAAATCTCT AGGAAAGATG TCGAGCGGCT GGGAACTTTC CCTCTCCTGG
  GGAAAGTTAG GAGATCGCAC TCATGGGCCG CTGTCACCTC CCGAGACACC GAGGTGGCTG
  R
  CACGCACAGT CCCTCCGGGT TCACAGGGAG GAGGGGCTCG GCTCGCAACT CCTCAGTGGG
  AGCTGGCCGC GGCCTCGTGC CTCGATTTAC CGGGCTGTGA CCTCTTTCTC CGAGAAGAAA
  CCCTGGGTCC TGAAGGGACG GGGGCGGAGG CCGACAGCAC CTGACTCACC TGAAAAGTCG
  GTCCCGGCCC TGGCTTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61025354	NES16102216	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49189745					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61025354	NES16102216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79392488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19314	CpG island 19314			within coordinates
Gm44706	predicted gene 44706			724 bp downstream
Pex11a	peroxisomal biogenesis factor 11 alpha			Intron
				Noncoding-Transcript-Variant
Rr649701	regulatory region 649701			330 bp proximal
Rr649702	regulatory region 649702			434 bp proximal
Tssr67364	transcription start site region 67364			402 bp upstream
Tssr67365	transcription start site region 67365			430 bp upstream
Tssr73125	transcription start site region 73125			227 bp downstream
Tssr73126	transcription start site region 73126			245 bp downstream
Tssr73127	transcription start site region 73127			275 bp downstream
Tssr73128	transcription start site region 73128			294 bp downstream
Tssr73129	transcription start site region 73129			364 bp downstream
Wdr93	WD repeat domain 93			423 bp upstream