rs49190148 SNP Detail

Summary

• ID
  rs49190148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98180907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGGAGC CAGTGATCAC
  TTCGGTAGCA ATGAAAAATC ACACCTGGAA ATATCTAGTC CCACTCTCCC TGAGCCCAGT
  TATCACGGGT TTCACCTTGA AAAGGCTAAG TAGTGGAGGA GATAAAGCCA GGTAACTTGT
  AAGCATTGTG CAATGTGTAC ATTAATATGT ACAATTTTAT GGTTACGTAT GACTCAAAGA
  R
  CAAACTGAAT CACAATAAGA CTTCATCCGG CGGTGAGCTC ATCAGATCTT GCCAAAATCC
  TACAGGGGCT GAAGTTTGTG TGCAAATTTC TCCTTACTGA TTCTGTTCTC TTCCCCATTT
  CTCCCTCCCC TCTCTTCTCC ACCACTTCCA CCTGTGACTT CCCCTTTTGC TTTGTCAACA
  ACGTAGCTTT TAGAGCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199535	NES16709213	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49190148					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199535	NES16709213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98180907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16083	CpG island 16083	1488 bp distal
Gm42759	predicted gene 42759	1411 bp downstream
Rr615103	regulatory region 615103	1515 bp distal
Rr615104	regulatory region 615104	within coordinates
Tssr47435	transcription start site region 47435	1938 bp downstream
Tssr47436	transcription start site region 47436	1759 bp downstream
Tssr47437	transcription start site region 47437	1738 bp downstream
Tssr47438	transcription start site region 47438	252 bp upstream
Tssr51995	transcription start site region 51995	1794 bp upstream
Tssr51996	transcription start site region 51996	1732 bp upstream
Tssr51997	transcription start site region 51997	1701 bp upstream
Tssr51998	transcription start site region 51998	1660 bp upstream
Tssr51999	transcription start site region 51999	1627 bp upstream
Tssr52000	transcription start site region 52000	1599 bp upstream
Tssr52001	transcription start site region 52001	1585 bp upstream
Tssr52002	transcription start site region 52002	1561 bp upstream
Tssr52003	transcription start site region 52003	1525 bp upstream