rs49190258 SNP Detail

Summary

• ID
  rs49190258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52142712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG GCCCAGCCCA TTATGGGTGG
  Y
  ACTACCTTGT GCTGGTGATC CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135176175	ENSMUSSNP1165214	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320764102	CHEV_3_52039213	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49190258					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52142712 () rs orientation: forward

Symbol	Name	Function Class
Gm38132	predicted gene, 38132	within coordinates
Or14m1-ps1	olfactory receptor family 14 subfamily M member 1, pseudogene 1	1547 bp downstream
Rr374955	regulatory region 374955	997 bp downstream
Rr576473	regulatory region 576473	1382 bp proximal