rs49190980 SNP Detail

Summary

• ID
  rs49190980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94886380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT ATATATATAT
  ATACACATAA TACACACACA TACACACACA CACATACACA CATGTGTAGA CACACAGCAT
  GGCATATATT ATATTTATAA TTGTAAGCAC ACTAAATAAA ACCTTTAAAT TATGATGAAT
  CACTTAAAGC TTTTTATTCT GTTAATATAT ACTAGGTATA AACCATATTT TTTGTGCTTG
  Y
  ATGTGTTGCT GAGCTGAGAA GAAAAGATGT ACAGAGAATG AGAACACAAC ATCATAGAAA
  CCTCCCTCTT CACCAAACAT TGTACACGGA GAGTACTGAG GGACCGTGGT TAAAGTCTCC
  TTTAATGAGG CTGTAAAATG TGGATCAGAA AATCAGCGTG GAACAGAGAA CTCCCTTTGC
  ATACAGCTGG CTGTCACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63596432	NES17037860	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49190980					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596432	NES17037860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94886380 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	1361 bp upstream
Gm52203	predicted gene, 52203	102 bp downstream
Rr391133	regulatory region 391133	1528 bp downstream
Tmem117	transmembrane protein 117	within coordinates