rs49191502 SNP Detail

Summary

• ID
  rs49191502
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40579827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTGAACC GATATGTAGG CAAAATGCCC ATATATATAT
  ATATATATAT AATTAAAACA ATAATAATAT TGGGATACAG GATCCATATT CAGTGCCAAT
  K
  AGTTTTTCAC ACTAGCTCAT TTTAAAAATT TTGAGACTTT CTCCTCTAGG TGTAATACCC
  TATTACCCTC ATACCCTTAA ATGAATTACT ATATTAAAAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393122	NES15896575	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49191502					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393122	NES15896575	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40579827 () rs orientation: forward

Symbol	Name	Function Class
Rr575827	regulatory region 575827	1867 bp distal
Rr575828	regulatory region 575828	1937 bp distal
Rr575829	regulatory region 575829	32 bp distal
Rr575830	regulatory region 575830	118 bp distal
Rr575831	regulatory region 575831	1538 bp proximal