rs49191656 SNP Detail

Summary

• ID
  rs49191656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGTGTGAT CAAAATTTTT TCTTAGAGAT TAAAAAAAAA
  CAAACCTGAA ATGGAGTCTA CAAAGAAAAG GATGTTTTAC AGAGAGAAAA CTTTCCAGAT
  Y
  ATCTGACTCT AGTCTGTCAT TTATCCTGAT TTTAGTTTTT CTTGACATTG AGCAATTTTA
  GTCTCTGAAG TTGCAGCTAA TTGATAAGTC ATATAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136309778	ENSMUSSNP2668238	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322906500	CHEV_9_37061483	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49191656					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1274 bp proximal
Gm10177	predicted gene 10177	717 bp downstream
Gm48081	predicted gene, 48081	1600 bp upstream
Gm65989	predicted gene, 65989	533 bp downstream
Rr676656	regulatory region 676656	776 bp proximal
Rr676657	regulatory region 676657	1506 bp proximal
Rr676658	regulatory region 676658	1611 bp proximal
Rr676659	regulatory region 676659	1830 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1459 bp downstream
Tssr88822	transcription start site region 88822	1483 bp downstream
Tssr88823	transcription start site region 88823	1505 bp downstream
Tssr88824	transcription start site region 88824	1531 bp downstream
Tssr88825	transcription start site region 88825	1546 bp downstream
Tssr88826	transcription start site region 88826	1632 bp downstream
Tssr88827	transcription start site region 88827	1725 bp downstream
Tssr88828	transcription start site region 88828	1748 bp downstream
Tssr88829	transcription start site region 88829	1771 bp downstream
Tssr88830	transcription start site region 88830	1787 bp downstream
Tssr88831	transcription start site region 88831	1832 bp downstream