rs49191713 SNP Detail

Summary

• ID
  rs49191713
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66370474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGAAG AGGAGGAAGA
  GAAGGAGTGG GAGGAGGAGG AGGAAGAGGA GGAATAGCTT AGAGATAAAG ATTTGAAGTC
  ATTTTGTACC TGAGGGAACC AGAATTCCTC TAGGCAAATT CCATGCTGAG TGAAAATGGG
  CAGTCTGCAG AACACCAGAG CACTGACCTC CCAGGAGAAA GACAATCTAC GCATGCCTGT
  K
  TCCTGGCTTC TGTGGGCCTT TACACTCTCA CACTGCTATG AGCATGGTGA AGAGAGGGCT
  TTCTCTTTAC TCATGAATGA GCAAAACCAT GAATAATTTC ATTTCCCATC TCTCTCTACT
  CTGTTGATGA GAGTCAGGCC TTATGACAGA GTTCTTTTTG TTTTGTTTTT GAGAAACAGT
  TTCTCTGTGT AGCTCTGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174727	NES16684017	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49191713					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174727	NES16684017	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66370474 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	1616 bp upstream
Gm73278	predicted gene, 73278	1495 bp upstream
Gm73415	predicted gene, 73415	1077 bp downstream
Rr378070	regulatory region 378070	732 bp upstream
Tssr51198	transcription start site region 51198	1413 bp downstream