rs49191774 SNP Detail

Summary

• ID
  rs49191774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACACAAAC CCACACTCAG ACGCACATGC AGATACATCA
  TTTCTTTTTT TTTTTTTAAA TAAAAATTGA AGTTAGGGGC TGGCACACAC TTGCAATCCC
  Y
  GTATTCAGGA AGGAAAGCTC AGAGGACTAG GAGTCCAGGC CAGCCGGCTT TGGCAATGAA
  TTGGTCTTAG GATTTGCTTA GAACGGTAAC GTGTACATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730629	CHEV_11_69412442	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49191774					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489766 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	796 bp downstream
Gm72066	predicted gene, 72066	789 bp upstream
Rr386229	regulatory region 386229	467 bp upstream
Rr450033	regulatory region 450033	608 bp proximal
Rr450034	regulatory region 450034	649 bp proximal
Rr450035	regulatory region 450035	1101 bp proximal
Tssr3544	transcription start site region 3544	1755 bp downstream
Tssr102487	transcription start site region 102487	1073 bp upstream
Tssr108712	transcription start site region 108712	1067 bp downstream
Tssr108713	transcription start site region 108713	1212 bp downstream
Tssr108714	transcription start site region 108714	1294 bp downstream
Tssr108715	transcription start site region 108715	1307 bp downstream
Tssr108716	transcription start site region 108716	1619 bp downstream
Tssr108717	transcription start site region 108717	1644 bp downstream
Tssr108718	transcription start site region 108718	1703 bp downstream
Tssr108719	transcription start site region 108719	1714 bp downstream
Tssr108720	transcription start site region 108720	1718 bp downstream
Tssr108721	transcription start site region 108721	1732 bp downstream
Tssr108722	transcription start site region 108722	1813 bp downstream
Tssr108723	transcription start site region 108723	1841 bp downstream
Tssr108724	transcription start site region 108724	1894 bp downstream
Tssr108725	transcription start site region 108725	1918 bp downstream