rs49191977 SNP Detail

Summary

• ID
  rs49191977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170822906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTATAG AGTGGGCAGT
  CTTTCCATGG AGCTTTGCTC TTCTTGGAAT CCAGGGCAGT CATAAGCTCA GGACAAGGAC
  TGGACACCTT ATGGCTCCTC TGGTATTGCT GGAACAGGAC CTTGTACAAG GTAAGTTTCA
  GTTACTCTTA CTTTTGTGTC TCTAGCCTTG ATGAAGGATG AGGTAGGTTA GGCACCACCC
  R
  TTTTTATGTG GACACTCTGG TTACCATAGC TATGCAGAGT GAAATAGGAG AATTCAGAGT
  CAAGGCAGAC ACACCAGACT TTCTGTCCTG CTTCCCATTA CCATGCAGGG CGGAAGGAGT
  CAACTCTTTT CAGCAAATCA GTTCTGAGTA TGTGTTATAG AATCATCTTT CCCAGCTTCC
  AGTCCATTTT CTCAAAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345151	NES15844879	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49191977					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345151	NES15844879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170822906 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	296 bp proximal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	281 bp proximal
Rr423177	regulatory region 423177	1591 bp distal
Rr423178	regulatory region 423178	1485 bp proximal
Rr423179	regulatory region 423179	1615 bp proximal