rs49192118 SNP Detail

Summary

• ID
  rs49192118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29192029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTCTGGGC TTCCCTTCTG TTTCCAGCTC CTGTCATCTC
  AGTGAAAGGA GTGGGTGGAG GTGGACCAGG GACACAGCAG TGGACATGTG GAGTGCATCT
  Y
  CTCTTCTTTG GCCTCAGTGC GACTCATCCT GCAGCTCTGC ATACTACAGG TGTGTGTTCG
  CAAGGTCAGC CAAGGACAGA AAACCATCTG GTTTAACGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61587161	NES17538033	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	T	T		T	C	C	T		T
ss137517953	ENSMUSSNP1346345	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss323976327	CHEV_12_29826895	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49192118					SNP	C	C	C	C	C	T	C	C	C	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61587161	NES17538033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29192029 () rs orientation: forward

Symbol	Name	Function Class
Gm31333	predicted gene, 31333	within coordinates
Rr464389	regulatory region 464389	91 bp distal
Rr464390	regulatory region 464390	within coordinates